**Note:** You are looking at a static copy of the former PineWiki site, used for class notes by James Aspnes from 2003 to 2012. Many mathematical formulas are broken, and there are likely to be other bugs as well. These will most likely not be fixed. You may be able to find more up-to-date versions of some of these notes at http://www.cs.yale.edu/homes/aspnes/#classes.

Dan Gusfield. *Algorithms on Strings, Trees, and Sequences: Computer Science and Computational Biology*. Cambridge University Press, 1997. QA76.9 A43 G87X 1997

Comprehensive text on StringAlgorithms with an emphasis on the connection to ComputationalBiology.